Analysis method and algorithm design of biological sequence problem based on generalized k-mer vector

Abstract K-mer can be used for the description of biological sequences and k-mer distribution is a tool solving analysis problems in bioinformatics. We use vector as representation method sequence. Problems, such similarity calculations or sequence assembly, described space. It helps us to identify new features an old sequence-based problem bioinformatics develop algorithms using concepts methods from linear space theory. In this study, we defined generalized sequences. The meaning corresponding operations explained context. presented vector/matrix form several widely seen problems, including read quantification, pattern detection problem. Its advantages disadvantages are discussed. Also, implement assembly based on methods. shows practicability convenience algorithm design strategy.